http://www.sbos.eu/ 2010-09-09T07:56:18+02:00 http://www.sbos.eu/ http://www.sbos.eu/lib/images/favicon.ico text/html 2010-09-02T16:17:34+02:00 Ivo Maintz http://www.sbos.eu/doku.php?id=changelog_german 0.4.7 in Arbeit 02.09.2010 * arcadia 1.0r2, vmd 1.8.7 hinzugefügt 0.4.6 * systems biology workbench Version 2.8.1, STSE funktioniert wieder aus dem Menü heraus, Kernelupdate. 0.4.5 ist fertig! * Softwarestand siehe 0.4-beta4 oder auch <http://www.sbos.eu/doku.php?id=software_included0.4.5> * Nur kleine Bugfixes: z.B. wird bei der Installation das SB.OS-Repo nicht mehr vergessen * Ist hier auf 4 Rechnern im Einsatz; Einschränkung bei nachträglicher “Umwandlung” ist nur das Feh… text/html 2010-08-24T14:50:25+02:00 Ivo Maintz http://www.sbos.eu/doku.php?id=software_included0.4.6 * BioNetGen 2.1.5 * CellDesigner 4.1beta (including plugin SBMLsqueezer 1.3) * COPASI 4.5.30 with java and python bindings * Cytoscape 2.6.3 (including plugin BiNoM 1) * Edinburgh Pathway Editor 1.3.0 * Ekee 2.0.2 * ISATools 1.2 * JSim 1.6.95 * libSBML 3.4.1 (with java, python, matlab bindings) * modelMage 1.0beta * OpenAlea 0.8 (?) * Protege 4.1-alpha-102 * RuleBuilder 1.51 * SBML2LaTeX 0.9.8 * SBML-PET 2.3.5 * SBMLeditor 1.3.4 * SystemsBiologyWorkbench 2.8.1 *… text/html 2010-08-24T14:43:44+02:00 Ivo Maintz http://www.sbos.eu/doku.php?id=menu2 * Software * Included (v 0.4.6) * Pending * Excluded * About SB.OS * Documentation (v 0.4.3) * SB.OS Team * Logo * Changelog (german) * Links * SBML * BioLinux * Klipp group TBP * Link collection * Wiki * Editing Syntax * Statistics text/html 2010-08-24T12:50:04+02:00 Ivo Maintz http://www.sbos.eu/doku.php?id=news 24.08.2010 added this newspage to the website :-) So it might be easier to follow our work text/html 2010-08-14T17:48:24+02:00 http://www.sbos.eu/doku.php?id=contribute This page is way broken - maybe we should be logged in to edit it. tj1X0z <a href=“<http://gsbatswipqws.com/>”>gsbatswipqws</a>, [url=<http://asfexdusubul.com/>]asfexdusubul[/url], [link=<http://llkjtpqexzdq.com/>]llkjtpqexzdq[/link], <http://fmdelbshwdzu.com/> text/html 2010-07-01T15:05:21+02:00 Ivo Maintz http://www.sbos.eu/doku.php?id=software_pending * SBRML lib (.NET based needs Mono) <http://sbrml.sourceforge.net/SBRML/Welcome.html> * SBGN: Arcadia (completly untested <http://arcadiapathways.sourceforge.net/>) * Javasim (<http://sys-bio.org/sbwWiki/sbw/javasim>) ??? * E-cell System * SBML ODE Solver (Christoph Flamm University of Vienna, Austria www die haben auch iher eigene LiveCD gemacht, Debian based, mit tutorials, emial kontakt aufnehmen) # funktioniert aber nur mit _alten_ Bibliotheken (libsbml u. sundials); trotzdem int… text/html 2010-07-01T15:03:53+02:00 Ivo Maintz http://www.sbos.eu/doku.php?id=start [SB.OS logo] SB.OS is a live DVD based on Ubuntu Linux that comes with a comprehensive list of Systems Biology Software. Text and video documentation material, as well as an offline copy of the BioModels.net database, are included. Screenshots You will find a screenshot here. text/html 2010-06-22T15:12:33+02:00 Ivo Maintz http://www.sbos.eu/doku.php?id=software_included0.4.3 * CellDesigner 4.0.1 (including plugin SBMLsqueezer 1.3) * COPASI 4.5.30 * Cytoscape 2.6.3 (including plugin BiNoM) * Edinburgh Pathway Editor 1.3.0 * ISATools 1.1 * libSBML 3.4.1 * modelMage 1.0beta * OpenAlea * SBML2LaTeX 0.9.8 * SBML-PET 2.3.5 * SBMLeditor 1.3.4 * SystemsBiologyWorkbench 2.7.10 * semanticSBML 1.0.11 * STSE * Taverna 2.1 * vanted 1.8 * TiDE 1.2.1 * Xppaut 6.0